Scaffold Ga0066655_10001325

Overview

Basic Information

• Taxon OID: 3300018431
• Scaffold ID: Ga0066655_10001325
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8877
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040546	Metagenome	161	N
F088599	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_1000132511	F088599	N/A	MVVAATLACNKGLEPALAPTSCPQGFVGVCGTVSFVGPLPDSTAKVFIVAFDTFPKSQNDLFKFKPQPTPPNLPLGGAPFFYTLPVPAGRYEWVLAVWQKQGTLTPTNADTLLRETGFYRDKADPTKPGVVVVPGGTSRDSIDFVVDFGNMHRVCYYFPPCP
Ga0066655_100013254	F040546	GGAGG	MLRKTGAVLLAVGLFLPYSPGVAVITSVWHNLAEVLFQGFPVLLAFVYALHSFVPPLARFHQRHGQALHGSLRMVYFVLVGAYLATATAGRADWPALGPVLAALVITGGLLYWGQGRGTKAERLPLLLLIAGGVPVIAYFIETLRAGALAYGGWVFTAGYVLAVVGEVQGLRAAPKIAHG