Scaffold Ga0187902_10183810

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187902_10183810

Scaffold Ga0187902_10183810

Overview

Basic Information
Taxon OID	3300018430 Open in IMG/M
Scaffold ID	Ga0187902_10183810 Open in IMG/M
Source Dataset Name	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1970
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.4148	Long. (^o)	-119.8405	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056212	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187902_101838103	F056212	AGGAGG	MTFEKFAAIAAAHRPDAVVHAHGSFGGVPDVAVYFTREDGTHSKVYSYRGSYAEILNRLGIKVITEADLRTTENLLKMAICSHGKPGLFTKGKLRDNSREIAELQERIARYMSEEYVRDW

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