Scaffold Ga0190272_10000034

Overview

Basic Information

• Taxon OID: 3300018429
• Scaffold ID: Ga0190272_10000034
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112507
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (53.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.4668
  • Long. (^o): -109.6253

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F004033	Metagenome / Metatranscriptome	456	Y
F020065	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190272_1000003419	F001519	GGAG	MTLVNSLCAEISVYQGVGESTGVMVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPVDLWPKAKEPIVVHKHDWTVISSIPRTSRAVKKRRVAVE
Ga0190272_1000003461	F020065	N/A	MTKKSQIQEIKEGRAMRERVWSGRLQPFGPKSALTTKNAVDLSTVPSSAEEKYNGGRE
Ga0190272_1000003470	F004033	AGG	MKKIVLGLALLLLATAGFAAERATTPELTPPDNGDQWLRLRSTEKLFWAIGYSQGYREALDKIDVTAGPTSPCASLAVRTERQSSTSGKMSGFELVSSLERFYAEPANTVIPVGSAIRIALLQAGGKDQATVQELIDTARVLGQQAAARPRQ