Scaffold Ga0181568_10055553

Overview

Basic Information

• Taxon OID: 3300018428
• Scaffold ID: Ga0181568_10055553
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3353
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025298	Metagenome	202	N
F030558	Metagenome	185	N
F084103	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181568_100555531	F084103	N/A	DETKIIIMADYSEFDDDKEGGRHITIPSGWVQTITYLKGDYKEKQNEHG
Ga0181568_100555535	F025298	AGG	MKKNLIVSAVRKVKDKVVVHYTDGTVKEFTIPEWEYSYGQGRRLCEQHEKDFKNPENFDGGE
Ga0181568_100555539	F030558	AGGA	MGRDKQKIGDVNELKATIKFLKEGYWVFRNVSPKGPIDMVLVHEKTGEVRKIDVKTTNYRQSWKPGTKIHRQRTPEQIKLKVEHIFMEKDEDV