Scaffold Ga0190265_10209948

Overview

Basic Information

• Taxon OID: 3300018422
• Scaffold ID: Ga0190265_10209948
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1966
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 37.9813
  • Long. (^o): -109.5168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016640	Metagenome / Metatranscriptome	245	Y
F055478	Metagenome / Metatranscriptome	138	Y
F064480	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190265_102099482	F064480	AGGAG	MSLTTDGAHEEHDQTAPASPYAREPEGMIDAPREMEASFEEIER
Ga0190265_102099484	F055478	AGGAGG	MNPISTRWGMRGMEDLTVEELVRLQQKLDGWIRQRAHDPKRLRRRPWVMKPHTAHPA
Ga0190265_102099485	F016640	AGGAG	MVSILIVVVVMACAGWMAWNRWTYWRTPVTPWPSAEQSPQTRAFEAFAHGNAYLTAEQWADATVAFEQARTLDPKRPYVAERLAEVARQQHAASAPAPVAAGG