Scaffold Ga0190265_10025440

Overview

Basic Information

• Taxon OID: 3300018422
• Scaffold ID: Ga0190265_10025440
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4812
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 37.9813
  • Long. (^o): -109.5168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005275	Metagenome / Metatranscriptome	406	N
F006451	Metagenome / Metatranscriptome	373	Y
F095093	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190265_100254402	F006451	GGAG	MNQPEGLRDGIRRKIVAGDLPKENCRMTWYGPGTGGLCVACGQPIGADDVEVECDLPSGGTIRLHRRCYDIWSAEWPTCEG
Ga0190265_100254404	F005275	N/A	VPNHPRRDSTPRPSRRPTPAALNLSGIEAASLVKFAYFTDAAPAPGTLLYTAFRRNMPSGVKEFTVRNPVTFFYGIQQTGGVLNIQVRWINPDGALARTSDQPMDQSREGALWTWQVDRLEKRDLAQAGVWVVELLISGHRVGRYPLLVKPAGR
Ga0190265_100254405	F095093	AGGAGG	MKALTGILVAMLAMAWPTSAAVALDITFDDVTSVGNPLVTAIEAHGYRFTGAFRSIDTPGDTFVSNGSAVYLGQEAGAPGITLTRSDAGAFALYELDAAGLYASPPAGLPNAQRVALLGLRIGGGLLHASYTLSDLPGFGHFLVPSTWYDLQAVTFTGLLSGATPAALALDDVGVGEGPTSVVAEPGTLALVLLTALVGIAVTLMRRHRPTPFRHH