Scaffold Ga0181592_10111548

Overview

Basic Information

• Taxon OID: 3300018421
• Scaffold ID: Ga0181592_10111548
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2118
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035726	Metagenome / Metatranscriptome	171	Y
F063454	Metagenome / Metatranscriptome	129	Y
F086331	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181592_101115482	F063454	AGGGGG	MTEPKQLELPFKIKGEMTNEDIPTLKQLMDRKYKRKPKHLAHLSDKAFKELQYIFRGKL
Ga0181592_101115484	F035726	AGGA	MPLIKKKTEKKTYYSDLTKSAMVKVIKDQTGLTLPALERATKVDIENIAIALNVEADYKG
Ga0181592_101115485	F086331	AGGAG	MTKITKMTKEQLIENIEKAESKLNNAQWVKQQTKFWLGVYVVHLAKLRAELKGRK