Scaffold Ga0181563_10301020

Overview

Basic Information

• Taxon OID: 3300018420
• Scaffold ID: Ga0181563_10301020
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 938
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F041769	Metagenome	159	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181563_103010202	F041769	AGGAGG	MTYDPDMLRQMNEEAQLRIAELSTALEGVTDIRDNLQDSLTAALHELDAYKKHVEVLEATISRLRLHIAQGVEL
Ga0181563_103010203	F085645	AGG	MTDGAEILTEAHDLITGPRQAEYSHPFDDYYKVRELFYTMTGVMLSVKQAVTFMVCVKMARLSTNLENDTWKRDTVVDAAGYLGCLAMVHQRIEDNLNTRLGIN
Ga0181563_103010204	F028157	N/A	MTTPETDYLTPKFVTVMADHDGYARWVGSIDATDIMQAYRTGGVYILVMLDEEGRITLGFKPGRHWEASWSP