Scaffold Ga0181563_10064072

Overview

Basic Information

• Taxon OID: 3300018420
• Scaffold ID: Ga0181563_10064072
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2526
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181563_100640722	F021759	AGAAGG	MDAGLATVLAAAVATFGAIIIAIMQLKGFRDENRADHAVVQKRLDNLIDMVGKQGAKLTSHLDWHLTKEPSKDHTVKQVATRKKK
Ga0181563_100640724	F003378	GGAG	MVEEVKIKQNATIAKFLDLGQRLLSLFLARALPAVTGGAIIGVSVAKAAILAGAMAVLEVVQKLASASTDGELTSEEIKEAFGNGKKK
Ga0181563_100640725	F020354	N/A	MISKLRDELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLALHLAGVLTKDGEDNGGRSED