Scaffold Ga0181563_10044072

Overview

Basic Information

• Taxon OID: 3300018420
• Scaffold ID: Ga0181563_10044072
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3201
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015793	Metagenome / Metatranscriptome	252	Y
F032867	Metagenome / Metatranscriptome	179	Y
F042853	Metagenome / Metatranscriptome	157	N
F046985	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181563_100440721	F046985	GAGG	MSDLLELYNESWSEEFNVDVDASKSMKVHVAPKTYAMLVQIGVFNIHSRGIADWVSKVDVEAIYMNLDFSVDMLLQNYQAIKMAVILKEYPFDRGYQQQADKIWNNILQHL
Ga0181563_1004407212	F015793	GAGG	MLSIKTFEDRYNNNKKFHHVNLLGLKFRVANNKRSKRLSNKILYSTDRGIVFNLLPSRYLCLITK
Ga0181563_100440722	F032867	GAGG	MDELEKMIDDLIDNHYRRQHLIGTEADESEYLADISEEDDE
Ga0181563_100440723	F042853	AGGAGG	MSKEGTYLIEIERHYIATIEVDAEREGEAIRYAYSDENQHIANRNEDYFHNFQEIEHEAKVVRFKSYEDQYPDED