Scaffold Ga0181563_10010890

Overview

Basic Information

• Taxon OID: 3300018420
• Scaffold ID: Ga0181563_10010890
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7638
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F103165	Metagenome	101	N
F105072	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181563_1001089011	F103165	AGGA	MTTFYMCQITGKYFEDTLIAKTAVRVADYPSEPSWGIYKTHDGAAILCDCDVDHAQEGLDNDS
Ga0181563_1001089018	F002858	AGGAG	MAIDEKSIYLVDGGDYQIYCLGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDKGNVVMPRVTLDRILFIASDELPQVESEL
Ga0181563_100108907	F105072	AGGAGG	MENVTTSKVFGRSIIIRKRKALKRPFSYSQGECYHKLSGGLWSLYVEHKNGRDVNISIDD