Scaffold Ga0181558_10009590

Overview

Basic Information

• Taxon OID: 3300018417
• Scaffold ID: Ga0181558_10009590
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8000
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031256	Metagenome / Metatranscriptome	183	N
F037936	Metagenome	167	N
F040053	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181558_1000959017	F037936	AGGAG	MARLKRKLWCKTNVKRSFGSNYNHKPLRSNWIQMVKDHDEPLEVYVSRKNELEAKMFKESLRGGKLSNVGHSDYSKAIAMLDEMLNGV
Ga0181558_100095907	F040053	AGGAG	MKAYLIDTKYELITEVDVKDYYHKLELLNCRMLEVYPYNLNGNDIWVDEEGNLKESNYFAELDVDNEGIANYVISGNALVLSCDDEGNSTDVKNLTIEELKSRIKFHGRRFIEHNGYGFTTRAWEDA
Ga0181558_100095908	F031256	AGG	MTIPYWQVGIKIGAESGQVNVHSDALPDASWEYAIEHAMDTARAVHPNERIEFLYVKEYN