NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181558_10003560

Scaffold Ga0181558_10003560


Overview

Basic Information
Taxon OID3300018417 Open in IMG/M
Scaffold IDGa0181558_10003560 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14306
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (40.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030099Metagenome186N
F033809Metagenome / Metatranscriptome176N
F077337Metagenome / Metatranscriptome117N
F078401Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0181558_1000356014F077337AGAAGMRKILTDDELTALAAKMELRRQWLMSPAGRARRDEVMRQYMKKTYSGNKQSQNKVLNFAGCYDVFEQKEMEYECKAIDGTDFVNPDYLKFKQKDFKERGLTGDWLN
Ga0181558_1000356018F078401AGGMENKILHLKDSVWMLSQPSPMPQELKDLIYDENADQQETLAAINAWKASRYSTPEAADAEAAQAIFDEKKMEGHNLISATVFLPSGNGIINCRQPETLEHCQIRF
Ga0181558_100035606F033809N/AMTTMSEELQLETKNFITKKLRDAQEATGHGRAWCKREPKKWALVAQHIIQKPDEVSTFLRKNKITKNFYYDVQTELMADPESSEIRNAWASEISSVLFQGLDTYRKSQNQYSDRVESGDIEIDGNELFKQGKSLQAFNDIHSKLTGNNIQRVVVEHKTTLDEAEEYARKMLEEIPEANIV
Ga0181558_100035608F030099GGAGGMTESEHETCKSLAEQLGKPYTAMSIGKLRAAVCSEEDLDGKYILPTGVLKITAQIKGEIKVIEEASPAIVTVRVLHHQTGNPRFIFAEDPDTRKKVRVSVPKRHKHIINQVGKRLKVNKVDQDGTSYYRYPAV
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