Scaffold Ga0181553_10117798

Overview

Basic Information

• Taxon OID: 3300018416
• Scaffold ID: Ga0181553_10117798
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1618
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010532	Metagenome	302	N
F010878	Metagenome / Metatranscriptome	298	Y
F032867	Metagenome / Metatranscriptome	179	Y
F046985	Metagenome	150	N
F067760	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181553_101177983	F067760	N/A	MKIRRIDMYIMNQYKNYCDEALRYKEFQKTFQSWKDDNIIELVKEYKNYRRLDRYGSKI
Ga0181553_101177984	F010532	AGGAG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDEPMKVSEIDIIHRIEEHMSYMVSSYLTKSYEGISMDEQALRQA
Ga0181553_101177985	F046985	AGGAGG	MSDLLELYNESWSEEFNVDVDASKSMKVHVAPKTYAMLVQIGVFNIHSRGIADWVSKVDVEAIYMNLDFSVDMLLQNYQAIKMAVILKEYPFDRGYQQQADKIWNNILQHLSEFNPEDAEELRNKLFKRRVAXTEHYTKN
Ga0181553_101177986	F010878	GAGG	MKIKAWNIGIVWEDGTEENIGDIPDWVANRVDEFLNELEEEYEXVIY
Ga0181553_101177987	F032867	AGGAG	MDELEKMIDDLIDKHDRRQHLIGTEADESEYLADISEDDDEN