NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10092070

Scaffold Ga0181553_10092070


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10092070 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1891
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046345Metagenome151N
F057323Metagenome136N
F068778Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181553_100920702F046345N/AMNIKINVREDSMGCLYLTPVKQSYIDQIIDYLKEFNVDSDGSALIQSDYDVESFYEDCTYRQKKDIQSGWGANMLFDAWAFLNYVGWDACESLELK
Ga0181553_100920705F068778N/AMNYLLGNKNIVDWGVFAEVEDSTDPELTQQIELVLPEHIQQEIYKLITENLDQAKAIEAMAQF
Ga0181553_100920706F057323N/AMKILVLSIRVHGEEDDIYVFDNREVNVLPTIKEWLKENDEHLDLPDHVTDSESFWEWYRKEDDIDHIFIGTQYKELLSE

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