Scaffold Ga0181553_10092070

Overview

Basic Information

• Taxon OID: 3300018416
• Scaffold ID: Ga0181553_10092070
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1891
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046345	Metagenome	151	N
F057323	Metagenome	136	N
F068778	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181553_100920702	F046345	N/A	MNIKINVREDSMGCLYLTPVKQSYIDQIIDYLKEFNVDSDGSALIQSDYDVESFYEDCTYRQKKDIQSGWGANMLFDAWAFLNYVGWDACESLELK
Ga0181553_100920705	F068778	N/A	MNYLLGNKNIVDWGVFAEVEDSTDPELTQQIELVLPEHIQQEIYKLITENLDQAKAIEAMAQF
Ga0181553_100920706	F057323	N/A	MKILVLSIRVHGEEDDIYVFDNREVNVLPTIKEWLKENDEHLDLPDHVTDSESFWEWYRKEDDIDHIFIGTQYKELLSE