Scaffold Ga0181553_10086345

Overview

Basic Information

• Taxon OID: 3300018416
• Scaffold ID: Ga0181553_10086345
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1968
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022417	Metagenome / Metatranscriptome	214	N
F028777	Metagenome / Metatranscriptome	190	Y
F050395	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181553_100863452	F028777	AGGGGG	VFKYLTYAKPMSYFEIVSDEKNISEFKKIRYILEVEGKICSLNPEFSTSGNLRKAVHRLNRDYNSGIYKEECNCDYKAKGKLNMDGTPRKHYAYLKDWAL
Ga0181553_100863453	F022417	GGAGG	MAQMPKFLEDYTTVDELISKMNKEYPESRLISEMVGYGDDWVIFKSSFYETKEDAEPKAVAYAKQTSKDHNSWFEMANTKANGRTLRIVFSESTLAEEMIGIAPSKEATPQKKTLDEKVKELEAEGLVQDITDSKQAIMNNIKEFAMEITNQNLDKARAFTAQALGAMNMSKHDVSFANMQSVKNKIQDIATEARTHVDKGE
Ga0181553_100863454	F050395	GGAG	MSYFYPIARKNKFTWTYRFLYWNPDIPKINLYTIDTDKGFQVAESAAWGSATFDGCKNMKYIGKNKMEVDNGTNA