Scaffold Ga0181553_10065785

Overview

Basic Information

• Taxon OID: 3300018416
• Scaffold ID: Ga0181553_10065785
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2338
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005208	Metagenome	408	Y
F005656	Metagenome	394	Y
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181553_1006578511	F005208	GGA	MTLEDLYWWRVQRLWTMYNKTTDDLVYQAMWERKLK
Ga0181553_100657854	F005656	AGGA	MKLKDLLEIQKIVEDRAIPHDVLEFDTVHFSKSKGYNVKILDLHLTHAIRILNNYLDDNIYPRYSDRQEINDSLRGIRDRVEDISEVVNK
Ga0181553_100657855	F025411	GAG	MSITRIYRDRDNKIKVKKFSFEEVKKDLTKFFSHDNGINNRKDNNETKRFIRDTKNS
Ga0181553_100657856	F003531	AGG	MKRKKWTQEEIERARELLKKHSYATVGKMLHRSKNSVIGQFYREKIMNGYVPDPFSKYTRKKEKDTYVNH