NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10058859

Scaffold Ga0181553_10058859


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10058859 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2510
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021540Metagenome / Metatranscriptome218Y
F028777Metagenome / Metatranscriptome190Y
F035554Metagenome / Metatranscriptome172N
F050395Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0181553_100588592F021540N/AMKVIDKIYDFENGDKYVVETKQCFHCGYKGTVEIFTQEMFYLNQGYHIQDAVKSLDRDYREQMITGTHPKCWIEMFGEEE
Ga0181553_100588593F028777AGGGGGMLGLFGRSKPLSTVEVLSLEKDISEARKIRYILEVEGKICSLDPEFSASGNLRKAVHRLNRDYNSKIYKEECSCDFKAKAKLNLDGTPRKHYAYQKDWAL
Ga0181553_100588594F035554AGGAGGMAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDEMVVFKTSFYIKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKAATPKKKSLDEKVKDLESEGLVEDISDKAQAIMDNIKEFAMEITKQDLDLARNYTAQALGAMGISKTDVSINNLQSVKNKIQDIATMARTEVDKGE
Ga0181553_100588595F050395AGGAMYPKIRKNKFSWTYKFLYWNRNIGEVNLYTITTDQGFQVAESAAWGNATFDGCRTMKYIGKNKEVEQWQQNS
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