Scaffold Ga0181559_10069757

Overview

Basic Information

• Taxon OID: 3300018415
• Scaffold ID: Ga0181559_10069757
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2263
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053261	Metagenome	141	N
F053304	Metagenome	141	N
F068782	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181559_100697575	F053304	GGAGG	MTTVKVFVHDVFLCTIPENKVEGMFAYLRRKGITNVTIRE
Ga0181559_100697576	F053261	AGGA	MTRKVYTPELKAEILAFYAENSAKDTAEKFGKSQKAITLLAYRNKFTKGTRHGESKYSLSFRHEVCQYYEHHTGVETLAKFDISPASLCLWRKDLGYRNKHRGYNLYTEVTAPKAVRKNYRIVKAENGDLKAKMMNLQGQVEDLKEQNRAQSQRIESFVQAIGGLLQQ
Ga0181559_100697577	F068782	GGAGG	MQYQVIPVRQELIPLMFVDDVTIGKPYDVVSAKTTEGGYFIGGNVTLNSGETYYIEPELHANGFVVKRVYVEDANETDPVLRAWGDYSDVSVFDRKDRPLFDWVLTWL