Scaffold Ga0181560_10072734

Overview

Basic Information

• Taxon OID: 3300018413
• Scaffold ID: Ga0181560_10072734
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1931
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024111	Metagenome / Metatranscriptome	207	Y
F025731	Metagenome / Metatranscriptome	200	Y
F027835	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181560_100727342	F024111	N/A	MSQPIFAFVFPYGEHGGEFRCKRNFVDAESAANWAVDIILKEGDDYCYFKEVESADYVFEPACESHTVVCWHDDAPTWEMYDVID
Ga0181560_100727343	F025731	N/A	MPNSTNTQRKKAQMASALFNDVQLLGSVITCTEAFDLLSCDEQMRLEDLIGTGNV
Ga0181560_100727347	F027835	N/A	MKTQQQIDALYERMKTAGGFECALIMAYMKADGGNARLLEDAFRGTRFDLLPKPKFDHGIETLRAAVRWADMRDESYNFDKTAEELLQEYEIWADCTDEQPIDQHFLTRLQ