Scaffold Ga0181561_10036960

Overview

Basic Information

• Taxon OID: 3300018410
• Scaffold ID: Ga0181561_10036960
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3222
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F007947	Metagenome / Metatranscriptome	342	Y
F016757	Metagenome / Metatranscriptome	245	Y
F029289	Metagenome / Metatranscriptome	189	N
F029934	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181561_100369601	F007947	N/A	FFLGNKMLDVGMDDLFIIGYLVVSLAIVIYLVIDTLKEY
Ga0181561_100369602	F016757	AGGAG	MSERTWEVKVEATTTREVIVHANTEYEAQIKAQIDMVGLVGGENTKVLRVQEITDGNDN
Ga0181561_100369603	F029934	AGGAG	MATIIRTCLACNGGGIAEYDKPVTDFANGGWIDSTYGKCDVCDGEGDLHVLSEFTSLDILAFLHEAATILENADIVDSTLDDIYGHVKEAKDKIREYIKFHGYDGDNR
Ga0181561_100369605	F002733	AGGA	MAKQTKLWIELTPTEANALMVLLDGEMENRFRYEGLDLKEWETLDLEAYKILAYHRFKTWYMENCDG
Ga0181561_100369607	F029289	GGAG	MRTAYECRHTLAYVSTSAITPRYPNAANDPRLTNTADKYFTLRRQIRDKEWNREPVTNAERDKLATLKRALNDDKHYTPNF