Scaffold Ga0187770_10282598

Overview

Basic Information

• Taxon OID: 3300018090
• Scaffold ID: Ga0187770_10282598
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005112	Metagenome / Metatranscriptome	411	Y
F039911	Metagenome / Metatranscriptome	162	Y
F046782	Metagenome	150	Y
F101012	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187770_102825981	F046782	GAGG	MNRLTNLALSVGETLFHESRRLLFGIALGAAKQLLGTPQPAGTRDLAFTRAFQKKAVDGALLAGPRTDQEYAKFTLKKGLPTEDRPRTLAVENAPHSVDDFSGVIEEGYGKGEKRLLYTGTGVIKVG
Ga0187770_102825982	F005112	AGGAG	MPLVVKYKLFWAACIATLCGLAFWKNSKSYPGKSKLWRLGKSAIDAGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVSGQVVARMDRRNRKEVAKAA
Ga0187770_102825983	F039911	AGGAG	MKYTIAAVFAVVAAVFAAVAAYFNLRYLTRRDLGFTPVKRYVTKLAKTLLHTEATAAKEAGVVQAS
Ga0187770_102825984	F101012	N/A	ALTMTEVVNYSVHGISSPLGVTFALGGTIVNTLMVTFVVPIWCRLSRLESRLS