NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187769_10106005

Scaffold Ga0187769_10106005


Overview

Basic Information
Taxon OID3300018086 Open in IMG/M
Scaffold IDGa0187769_10106005 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002850Metagenome / Metatranscriptome526Y
F004352Metagenome / Metatranscriptome442Y

Sequences

Protein IDFamilyRBSSequence
Ga0187769_101060053F002850AGGGGGVTEVHADTDALRGLHEALVRYRYAQREVAGRGDDAITLARAALEAKASRWQAQLELCEAEFGACRDRAARAAQDSAAECPGDGTVDCSDYARAVEQSRERLEHIRRWQQRIDAEASEFQPTASRFLGLLETDLPRTEEHLLAAIRSLEAARRVQAPGV
Ga0187769_101060054F004352N/AVITRPDQDGEGQLRLLEEAWDKAAQHWQDGVARQFDADQLTPLLRESRGYLEALRRLLDLLEAADRDTAD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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