Scaffold Ga0187769_10103643

Overview

Basic Information

• Taxon OID: 3300018086
• Scaffold ID: Ga0187769_10103643
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2046
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004042	Metagenome / Metatranscriptome	456	Y
F009247	Metagenome / Metatranscriptome	321	Y
F046497	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187769_101036433	F046497	GGAGG	VGFRRLVRYFRGKCLSLSFVSLLCASMAEGQGAAPETAPPLFPGGELISYNSVFTTRGEVPPSTSIPVTARPTFAHEGDFNFTWGFYRDFDLTILIPVVTNHSEMPGMPTVGGTGIGDAMALLKYRFYRQDSQRGTTQASLTLGPKLPTGQTNLRNANGALLPASLQPGSGSTDLFVAANWTYTGLFNIKRLVADEDFHSLIRSRGTQATRLGDNSESRFWLSYRPYESKNVAREWFIGPVVTWLHSQDDLIGGITARGSGGDVFEVGATTYVGLRPGMHLWLGMDWDVAHSTGAEFMPVRRHISFGITQQFRLHL
Ga0187769_101036434	F004042	AGGAG	MGRRHIALLLLLGFVFVPPLQAQIKHIEMRVEGMT
Ga0187769_101036435	F009247	GAG	VKQHLQRQSGVANVDVSLIDGKVNVTPKEDGQIDPTQ