Scaffold Ga0187772_10001288

Overview

Basic Information

• Taxon OID: 3300018085
• Scaffold ID: Ga0187772_10001288
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11802
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F014888	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187772_100012885	F005268	GAGG	MSRGDRESEQVWRTLSEAGLVEIRVDEFPERLKEVKRIVTERLLELLDFGASIWERETAAHSLGTLKGLELRLPVISQTPPDLPQK
Ga0187772_100012886	F003832	AGCAGG	MKSAAEQLFTKANWPPQKGQVISFQSSIGAETAVLREVRWGLVWRDFILDDGRVVAEHRVSGCPKPQEWRNLDEITDHEREECEERLFSMAVAGVDPRERDQMFWAELNQYLAYTYLRYKSERSKASDAAR
Ga0187772_100012888	F014888	AGGAG	MNKVLEVLLTVVALAGLYSAISINGSPPANSQIRAEQAVVVADGSDPMPLCRARLCNQ