Scaffold Ga0187772_10000257

Overview

Basic Information

• Taxon OID: 3300018085
• Scaffold ID: Ga0187772_10000257
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23084
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010407	Metagenome / Metatranscriptome	304	Y
F012232	Metagenome	282	Y
F095693	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187772_1000025723	F010407	AGGAGG	MKSILITILLGGIVLLGASSCATVPKEPLASGELRLLSMDVLGGGGTVSENSSFAVNVFFEAAGNPQIKKVCFSESGEGPYCFDVSDISYLTLGAKTAFQARLPGVSVGSHRVECYAEYIRDGEARKTNVVFTQILGVTGTRG
Ga0187772_100002578	F012232	N/A	MSPKDQLVSILKPVLMNIAVLLVISSCITITEGPEGPSISLGRTEPSNRGELRLLTLDIPQSWNLAANVEYLTTINFEADPKPQIRRTCFNFSSDTQSCIDVQAKDVAYGSHAYFRVPIHVPMGTKRIDCYAEYIRDGTTHRTNTVTYYVVTLKKQE
Ga0187772_100002579	F095693	AGGA	MSMWKKKKLKPERLAVNVSEETRRKIEEEAEAEDISLSAWIGRAIDRCFECKNKTRKE