Scaffold Ga0184629_10042242

Overview

Basic Information

• Taxon OID: 3300018084
• Scaffold ID: Ga0184629_10042242
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2039
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015167	Metagenome / Metatranscriptome	257	Y
F021132	Metagenome / Metatranscriptome	220	N
F066550	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184629_100422421	F066550	AGGAGG	MDESRIYIDSERFNDLSNAIGELIKYLGWLNERKDLEAINKLSPIVGRMTDLFVAITEGAFPRISHAVDTINQVRGEISQRIAQANTPEEIEQLSKEVDKLVSDYQKRIDEVKAETKRLEKQSRKQ
Ga0184629_100422423	F015167	AGG	MITMEHKSCPVFVDGKECDRPLTLVDLEGKKIARYDLATYECNLRHRTYFLLEPK
Ga0184629_100422424	F021132	N/A	MLIFYCNYCNEMLKGGDYESTDQIVDRLDEHIKKCPPAAFTFEGTTGVATQRLDALRSFHEGERRAGKIRLH