Scaffold Ga0184628_10002577

Overview

Basic Information

• Taxon OID: 3300018083
• Scaffold ID: Ga0184628_10002577
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8671
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031540	Metagenome	182	N
F050455	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184628_1000257710	F031540	AGAAG	MATYQQLQDDVLWYLDRRDAAARIPSWVQLVETEIQQTLRHRCMEVSATQAIDNHHITLPPDFCTMASIRDAASGENLVLKDEWSGHWTYPSWNGGYSTAYRIVADCIEFLPWPIIPDPPDPLWVPQTVIMTWYAKPKTLLLPSDTNPVLEQLYSIYLYGILAHATLAEQDEPMAPQWDAKYQQAVTRANLNTQQSTYSGAPYAEEMSGAIY
Ga0184628_100025774	F050455	AGGAG	MTVLAGTIRASSTGNPDWRACDGGTVYVGDNKLGGIQVLPRAAPAPGFGDHRDWRRRVGTKYGWTGLGPNGFRFRLPVAKDGNYVKTNDDTADT