Scaffold Ga0184625_10031788

Overview

Basic Information

• Taxon OID: 3300018081
• Scaffold ID: Ga0184625_10031788
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2586
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003001	Metagenome / Metatranscriptome	514	Y
F018755	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184625_100317881	F018755	GGA	MAASSFFGSVMANIGADAQTSCDSAGSSDTGHHGTDPLLITGNKIRDAALGEPRIRAGEIIGWRFWKLSHGLLYSVFVSYTWHPGVFERSSSKHIGLKNPGYHAFRDEGQAEREVSLHPTYRLPLLARSPCGEVIEHQHGWRSEYAAVRSITKITGDRDFSSKQQLLLALREKYGCALVTELRALIILRIAERV
Ga0184625_100317887	F003001	GGA	MIRTAIVSVTASFVLFGAWAVNLVSYHPATDLNPLAPLSAPVDWK