NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180433_10185759

Scaffold Ga0180433_10185759


Overview

Basic Information
Taxon OID3300018080 Open in IMG/M
Scaffold IDGa0180433_10185759 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009045Metagenome / Metatranscriptome324N
F030153Metagenome / Metatranscriptome186Y
F103914Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0180433_101857591F009045GGAGMNKLSENFTPSRTSRGNRHIVKGQIIQGDEYVVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGSAK
Ga0180433_101857592F030153GGAGMSLIVDFTNIREDAKNELNQYQYYIGCYMMAIGMGEITQDNHLEVYARLVLLNASNLSTDEPWMTLDTVKALIGAEFNIAYESKSKFSTRMIKATLREVERLESKESKEVA
Ga0180433_101857593F103914AGGAGGMYTADRTDLLDALASSMRDCIETEISSTDFTLEEYFRCSLIDRGVASTRSEMIARRMAEGNLEGLAYHVASCDPHYLRKLIQAEPRLIHMLLQNNKMSDLDVKIVEEEVLK
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