NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180433_10102667

Scaffold Ga0180433_10102667


Overview

Basic Information
Taxon OID3300018080 Open in IMG/M
Scaffold IDGa0180433_10102667 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2466
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y
F023615Metagenome / Metatranscriptome209Y
F029710Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0180433_101026671F023615N/ARFDLEDAMSDLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQMHETRYQKMWGIFESLIKNGTISNKEIQND
Ga0180433_101026672F016956AGGAMIELEKPWQAPKKVALEIIDLALTHIKKVEANPEVKTEGDNFDYWNSYELEDGTYIDYNIYCGDDFCILKQDGSGEYEYTDPSEWSWDVACYAVDPPTKDNPYHQIDTNRTNYLFSYNKEGDGKIVYEN
Ga0180433_101026674F007770N/AMSGEGLSVSFRRTSMTAKSNQQLLREFQSIVYASPVTKHMKWYGKDHSVDILEHGDDNRPKFQQEYVAIKDTFQFEISVYESWYKDADLYESHEREDSFVSLARKFANDNALMYFPDGFPAEWIEQEIIDGKKNWNHFNVKSDDKNIDKICDVWYRYGIMKLQAFDEKVESELWYEARDKIKELMELNYEDAKLANN
Ga0180433_101026675F029710GGAGMKMQSWLTIRQEDDTDDWSAPIMWLDDGSEDNLFPSDDLNIDWVEEMDKEGAPILEDDHLGRDICIEVTCPSKGWNKRRAVGYNIDMEWN

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