Scaffold Ga0180433_10029996

Overview

Basic Information

• Taxon OID: 3300018080
• Scaffold ID: Ga0180433_10029996
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5491
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007621	Metagenome / Metatranscriptome	348	Y
F012403	Metagenome / Metatranscriptome	281	Y
F017755	Metagenome / Metatranscriptome	239	Y
F037204	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180433_100299963	F007621	GAGG	MQNSSTQIVPVVNNTLESEGFALAKEWKSICKADKARFTKSTKADGFDTRLGKLMQKLKAEGGERISSQRLKDCGIDGIDRRRRAEALWFVENETACRDFIKASKKGFTSLTALQAAMKPKAPKKPKADKPVQPEAEDKSNVGLNSEADESPIADKSPSDIALEALVQCEVNNVRIKDFMLALKEQLEMLDKVAA
Ga0180433_100299964	F017755	GGAG	MAKRGAIVDMGRHKAIGSSWQAMDIQAFSRSYEPETRPEFRVYVTGQADAMMATYRKTKDKADALAILDSLL
Ga0180433_100299967	F037204	GGAG	MNIEIYKSLSMYDYAMDVYQKAMHMKHDHNAEHYDVQDIINYLQFIHDSEKGNAD
Ga0180433_100299968	F012403	GGAG	MRIRPINPVAKALAQSRRRSQTVPDKTKYNRKKDKDDANKSGKDEVTKD