Scaffold Ga0184627_10147385

Overview

Basic Information

• Taxon OID: 3300018079
• Scaffold ID: Ga0184627_10147385
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1247
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003507	Metagenome / Metatranscriptome	482	Y
F009760	Metagenome / Metatranscriptome	313	Y
F063438	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184627_101473852	F009760	AGGAG	MRLLRHLQHWLTGQGLHIAVAEFVPETHPVRQWADTLPWAALVAAVDRSFVPRFPTSTARGRAPVSARVLLA
Ga0184627_101473853	F003507	GGA	MYACGIRGVQVDRSQGHFVLPEVLAQFRSRIDAALMDELLALQAAAAMEAGLVSPAHLVVDTFPSEQGSQRVNDAATLYKAKKKSFRSLRTSPSTALPRARR
Ga0184627_101473854	F063438	N/A	MRGFGRQCRGQGKVFVTLVRQTETQLLATGHQVVGLAQAAQAHVQSAAHLATDQRARLDTQLQAALTAHQQITTQSRRLTHGKPLTQCKIVNAYDPT