Scaffold Ga0184627_10039344

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0184627_10039344

Scaffold Ga0184627_10039344

Overview

Basic Information
Taxon OID	3300018079 Open in IMG/M
Scaffold ID	Ga0184627_10039344 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2417
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016227	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184627_100393443	F016227	AGGAG	VIRMIGPIVVLLVLGMGTVGPVIADEAPISGTVKAVDPAGQTLTVETTAKGKTRTVTILLKPGSRIVKFARSTEPGKTGFVEQTIALDDLKPGWIVSVTAKHEGDREVAEIVKVVLER

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