NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184609_10096388

Scaffold Ga0184609_10096388


Overview

Basic Information
Taxon OID3300018076 Open in IMG/M
Scaffold IDGa0184609_10096388 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1324
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015316Metagenome / Metatranscriptome255Y
F097053Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0184609_100963881F097053GAGGVARRFSLALVAGAIAAASSCADSSPVGVPSFDGVVKSAGAGLVPCAQTYDSVTQVIGPAGGLIAVGHHFLWVDTMALADTVRITAVAPADSVRWVRFQPDGLQFRTNGAGRSAILYT
Ga0184609_100963883F015316N/ALIAVGHHFLWVDTMALADTVSITAVAPADTVRWVRFQPDGLEFETNGAGWSALLYTSFSDCGLPTVDTLRIAQVTDSLRVIRYLAQPDSVWIRVRKNPGSKGSQYVAGVLHHFSQYAVAW

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