Scaffold Ga0184609_10078143

Overview

Basic Information

• Taxon OID: 3300018076
• Scaffold ID: Ga0184609_10078143
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1459
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007214	Metagenome / Metatranscriptome	355	Y
F013226	Metagenome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184609_100781432	F013226	AGGAGG	MTRLLIVRSVLACLIIAIGARGAPAHITPPVVLVSDRDAVAGLLTGARRFFVREFRLSPEDRRSVQQQSGWTPDEDFYRFYLGRDGDGRLTGAMVFVTDYTVHGPVRVAVGLAPDGKIRGATIVEVTEETYTWIKPLIDQDFTRDYVGQDSHGKFGLPERLTRARLESMPQFYASVVGGLMQRAAILYDVGIKQKGAA
Ga0184609_100781433	F007214	AGGAGG	MYGFELGRFPVSAKVFCTLFLIGIGCGLVAAFAQTATAVGLSPAQVQASLAPEMPMTHLGHGQPAAEKEIDLGQVSAAAKVWIRTPLLIQTSHTHLFGQTLIAGILGSIFLFASLREWLKTAILALPFVATLIDIGGMWLTRFAWPGLASLVIVGGSLFALGYVLIAAISFYQLWLTKEARA