Scaffold Ga0184609_10000474

Overview

Basic Information

• Taxon OID: 3300018076
• Scaffold ID: Ga0184609_10000474
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11690
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041798	Metagenome / Metatranscriptome	159	Y
F046971	Metagenome / Metatranscriptome	150	Y
F075888	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184609_1000047410	F046971	AGGAGG	MPCIRCGKITVKLCTCSIEEAKEAFSAWSEVELEQAISTLRTVLNSKQSAR
Ga0184609_100004746	F041798	N/A	MQRLLDRLAQSAAQQKQLHEMVERLVRENEELREEINSLQNMVTHLTGQRAETAQALRGLAAYLTAVKDQVLRQSREGRSSE
Ga0184609_100004749	F075888	N/A	MVDEGHGADDDLRRQVRARLSEGRLPSVDGVSKSHRGTGRPCIVCRRAIEPTEVERELDGVDVVLIAHEACYKLWREESKARRESSQ