NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0184624_10319682

Scaffold Ga0184624_10319682


Overview

Basic Information
Taxon OID3300018073 Open in IMG/M
Scaffold IDGa0184624_10319682 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004397Metagenome / Metatranscriptome440Y
F013919Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0184624_103196821F004397GGAGGVEFTLKVALAIFFAKLIDPIAVLPAVVAGYFCRTWWQVVIAAAAVGIVVEMTLVLFQQTPEIHQGRLLMGILAAGVWSNLAFVFKTWRVKRREREVG
Ga0184624_103196822F013919N/AGNRPLAEKPSMMEGAMEIVFWVIVAIIVFAVVYVCALSFRKRKQAFGRESSMSDGAPDTKGHGIDLQARRKTYDDVT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.