Scaffold Ga0184624_10007595

Overview

Basic Information

• Taxon OID: 3300018073
• Scaffold ID: Ga0184624_10007595
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3631
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015747	Metagenome	252	Y
F036726	Metagenome	169	N
F061606	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184624_100075954	F015747	N/A	MSASSASPDVVDYGLITMDNNSHVTGLRALVANVMLERARELSDLQASEVWRLTQLIDAGASLKSVPPATLQMAMDFNRFPIARRVIEEKAIAYESATGKVGNID
Ga0184624_100075955	F061606	N/A	MDQNPPVNDPGPVTRENALEKVLALSVSQAHEIWHAMQLIATNGSLEGLPRPVVQVAMELNDFLNAWKVVAEKAVIHERLIGKPRRRGLWFDNHG
Ga0184624_100075956	F036726	N/A	MSFSWLKTCKASVARRLAVAGRPEEIMELDANMSDPFVELIKTKKGLTDIHVATFEVHSRPSTFEDALEKAVKLSRAQAHEVWYVLQLLVGHESLVGRPAEVVELAMEFNPFPLTWKVIADKALEYEHLTVKQKA