NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184618_10178959

Scaffold Ga0184618_10178959


Overview

Basic Information
Taxon OID3300018071 Open in IMG/M
Scaffold IDGa0184618_10178959 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)879
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014924Metagenome259Y
F085833Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0184618_101789591F085833N/AVSSSLLLVVAIFLVAFDFQNLLSWWGGRTIKPGRQTSQDFTIVVPVFGHPRYFDGERLLRHRHRVLIAMEISAPMMAAFADELEADGWNVQRLELPDPNPAALIAAALPAVATKYVF
Ga0184618_101789592F014924AGGAGGMQSAATRGFTVVTVVTLLFTPLWRGHHWVDVLTGKTTETTVVKCQPNEPCPAQKHITKKVVLQHP

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