Scaffold Ga0184618_10000176

Overview

Basic Information

• Taxon OID: 3300018071
• Scaffold ID: Ga0184618_10000176
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14487
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016788	Metagenome / Metatranscriptome	244	Y
F075944	Metagenome / Metatranscriptome	118	Y
F102790	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184618_1000017615	F016788	N/A	NIATREVVQRFGHALRRNLLDRTLGADIDQVRGADAVPAAVERRVYAHIAAHLPYYSATIIAAGDPAERFFALAKLRDPGGRPLTDVIENIVVDRVGSYVAFPLRSTEFTTPEWRSALAASATQPARASQEFSVTLPVPGVWLRSELFPAHLATESAAGAEDVKPESETGRTERRKRR
Ga0184618_100001767	F075944	AGGAG	MSSDIFVAFGGVGFLGLIAFLVALHLIRRDEARRRSNQSKE
Ga0184618_100001768	F102790	AGGA	VKTAQERLEDAMREVGTLLIAFAPLDAALAERPGSTGLLLLFMAFGVLLFIGSLLIERSRSHVK