Scaffold Ga0184618_10000174

Overview

Basic Information

• Taxon OID: 3300018071
• Scaffold ID: Ga0184618_10000174
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14593
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001175	Metagenome / Metatranscriptome	756	Y
F001699	Metagenome / Metatranscriptome	649	Y
F053947	Metagenome / Metatranscriptome	140	Y
F062540	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184618_1000017411	F001699	N/A	MKTFLRHLLIAILPLVFGLAASWGFAFSQHTCGRLVGPVFAPKCHWIQLEYQLMFLMAGTAFGCVIAATLGTWLELRRRRAVQPADSNQGGPS
Ga0184618_1000017412	F062540	GAG	VSTPAASPAPWQAWVALVWAVTGPPLLVYAATRVRGGNTPLHAALMIAAVTVTVGLLVAFGFVAEPSPRRAALVALPLFKIHLAFAFTALAGMAWQLTSRASPRLRTLHRHSGPYVVLAWCLALVTGIYNFVFLYVMGTP
Ga0184618_1000017418	F001175	N/A	VRRFGLAAAALALAACGPSDPCSSYQFRRLERFSRPYAGTWVVARGDTLTFPDSPPMSDRFRLAAVVLDTATVVAGRDCLLRGRIVFHAPRAETLTVTWFGQPEQAIVNGWPADLGPFAGLSLAPWGRDSLRGAVLFDSRLGVQVRPGVTAQFVAGRLSSAP
Ga0184618_100001749	F053947	N/A	MDLVPQIVANLEVEEGQAEKGVGAILMALRMVVDKPTFDKVKIAVPNHESYMGRALMSTARTGEMIGVMGPAALVAGLAAAGFRKEDVPRLGRIVLEHLRPTLGNETVERFLEGAPALKG