Scaffold Ga0184618_10000028

Overview

Basic Information

• Taxon OID: 3300018071
• Scaffold ID: Ga0184618_10000028
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37738
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001572	Metagenome / Metatranscriptome	669	Y
F002984	Metagenome / Metatranscriptome	515	Y
F031826	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184618_1000002820	F001572	GGAGG	MKPYLMLAATLSLAGCAGGYTSATLVYGEPAEYVYVVPVDRVVVVTREVLVHRGWVVYRVQRSGRNRIVWARHGDDEIVRIFATPQGERVVVRGMWEGRERRDRGRHRGWVKKGPPRDIIADIDVRLRGR
Ga0184618_1000002828	F002984	AGGA	MHSENRMALRRSLIPLAILAALAATSSCTDPSPLGVPEFRRGGSGQGGSTKGTGVVACSQTYDSVTQVIGPAGGFLLVGSHILWVDTMALTEPVRITAVAPADTVRWVRFQPDGLQFRTNGAGWSAVLFTSFKDCGVPTADELRIAQVTDSLEVIRYLAPAAIWIKVRKNAWSQGSQYLAGVLNHFSQYAVAW
Ga0184618_1000002837	F031826	GGAG	MKRVALFAFAVPWLAACETPPSAPTPQTPLIRPPSFATTILNERVPVAGDFAINTCPPEEVVELLSGFLHYVVTEEIGPTSSTVTIHINAEDIEGVGQATGARYSQPANSKEEITITEMPPTFSQEFDLRYRLIREGSLDDLWFRFTFTLTVPPDTEEEVRRLEIECRG