Scaffold Ga0184611_1016690

Overview

Basic Information

• Taxon OID: 3300018067
• Scaffold ID: Ga0184611_1016690
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2206
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024048	Metagenome / Metatranscriptome	207	Y
F053943	Metagenome	140	Y
F092241	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184611_10166901	F053943	N/A	MDEVVAPLLHNKEPVNEPAVRIELPQLSATETTGADGIAFGAATPLPEELGHPFTICVTKYVPAVVTVIVEVVAPSLHNKEPVNEPAVSVVLPQLSTTDTVGADGISFGAATPLPEGLVHPFTVWVTVYVPAV
Ga0184611_10166902	F024048	AGG	VTVIDEVVAPLLHNKEPVNDVAVNVELPQLFTTVTTGAAGISLGAATPLPEGLVHPFSVCVTV
Ga0184611_10166903	F092241	N/A	VIAEPAAPLLHNKGPLYPDVDNIELPQLFTTVTTSVDGSAFGAATPLRDGLVHPFTVCVTVYVPAVATVIVEVVAPLLHNKEPV
Ga0184611_10166904	F024048	N/A	MDEVVAPLLHNKEPVNEPAVNVELPQLFTTVTTGADGISLGAATPLPGRLVHPFTVCVTV
Ga0184611_10166905	F053943	N/A	MDEVVAPLLHNKEPVNDVAVNIELPQLFSTVTTGADGISLGAATPLPGRLVHPFTVCVTEYVPAVVTVIDEVVAPLLHNKEPVNEPAVSVELPQLSTTDTVGADGIAFGAATPLREGLVHPFTVWVTVYVPAVATVIDEVVAPLLHNKEPV