Scaffold Ga0184611_1013519

Overview

Basic Information

• Taxon OID: 3300018067
• Scaffold ID: Ga0184611_1013519
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2388
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013781	Metagenome / Metatranscriptome	268	Y
F080303	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184611_10135194	F013781	AGGA	MRVIHSAQFELSIDGVSRTYRDQKELALLAAQILKFKNPQSAVRLKDLKRGEVIVIAFKAAQQ
Ga0184611_10135197	F080303	GAGG	MTQIAEFGTPTPSRGRQIKFTPERIQQIKNLVERGKRREEIAELVGVTVGSLQVTCSRLGISLRRPNFNNGIVSLRRNDPRRNSQPGAMEQVQAPAPRQEVEQKVNEPGAATFAIRMQYRGKERTTELPLTQDMIGQLAFEAAFRKVSIGAFIGELIVAVVK