Basic Information | |
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Taxon OID | 3300018066 Open in IMG/M |
Scaffold ID | Ga0184617_1079234 Open in IMG/M |
Source Dataset Name | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 888 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9195 | Long. (o) | -106.9496 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020506 | Metagenome | 223 | Y |
F024778 | Metagenome / Metatranscriptome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0184617_10792341 | F024778 | AGGAGG | VNRPDPTNLAGGWQATPANPIPRAARQPAANGLLLVMLLLVWFSPLSIVAWLVGQAVILLQRRWHWWRFTLAALVAIAVVLLVIGPEQALRRHIFVPQHFWQYVALHFGFGPPGTKVTVGQFLGDLVLTQVWLAVPVGLLAASLSVWN |
Ga0184617_10792342 | F020506 | N/A | VIPQLAHVHAVGVVRLALEPSIPTGGRWLSERELRRAAGKSHVPDGAVQLPDDPDTHAGAGLYGEDVDPLPRRVAVEVELTRKGAARLREAWTRPRHGRWQRTVYYAPPEVASYLTRQLQRIRPRHPIQVYPLPDVPGTTYMRPGGAS |
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