Scaffold Ga0184617_1003306

Overview

Basic Information

• Taxon OID: 3300018066
• Scaffold ID: Ga0184617_1003306
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2666
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047523	Metagenome / Metatranscriptome	149	N
F048509	Metagenome / Metatranscriptome	148	N
F097678	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184617_10033064	F048509	GGAGG	MTTGIAQVVIGIALTAAIGGVAALNPGYKPREDVAYLERLAATVERAKVLAPDTREQLSKLTNRYETLLSDAQLDLKRQKALGRIRTVMLRSAD
Ga0184617_10033065	F097678	AGGAGG	MKPNPKWTAATLVLAAAMVSTMHALAITPVPMVHESDGASANGSKTYDEWQAPLSRSFRARFLDHRTAEDAIDGGAAGRGFTLRIFDGLEKMQIWDNAP
Ga0184617_10033066	F047523	GAGG	MSGFITGLKSVEEVEAGIFEVVVTLQRGATAKLRMNTFTFQAFVIKFIDGPRPERWLDKPIYFLKKIFAPLWHSRERQ