Scaffold Ga0184637_10000651

Overview

Basic Information

• Taxon OID: 3300018063
• Scaffold ID: Ga0184637_10000651
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25348
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041418	Metagenome / Metatranscriptome	160	Y
F076993	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184637_1000065116	F041418	GGA	MTMHAQRCPTCGDLLATDKDSLLPPDVRLTPWMIHDLPRIAWIVEYRAAELTDEERQIVRDATTRMRRALEHDTTPSD
Ga0184637_100006513	F076993	N/A	VWQQAWPYGLSLIMVLAATIAALALAWARNGAVAGLLDTVLRQVRGMLGIG