Scaffold Ga0184619_10029193

Overview

Basic Information

• Taxon OID: 3300018061
• Scaffold ID: Ga0184619_10029193
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020420	Metagenome / Metatranscriptome	224	Y
F090163	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184619_100291931	F020420	GAGG	MLSLDVAATWTRMLSVTAGACTAAGAPGPGTRIRGRPALDWVPGPWLGLIDFDGLRRAEREVLLPWLFGHVERLLLVRHILLAKPLEEDIFIELTAQALEAMPEGWRDRPHPILILAPAQRGRQERRTEYLDALSRLRIPLVSKGSELWAVREFDVDFLVALAQLSDPLERASFRASIDPSQTRLFDQQLAVAEAAVLDDLVGGRDEETPIGLDVDALSSLHPGVHPLALYSAVERAHNRRRESAERTH
Ga0184619_100291933	F090163	N/A	QAAAGNARKRLNRNRAERRTTDHARALLARFASGPGARFWPWVDRAGRLLPQAEQTLTPEMAGLCFFTLLAHAASERRSRGGPSGGLSPPLADAGFGSPEWLPDRTDDLAIRLLSAGASSGVPRGELLEAVSALARGTLGGASARDVSFALERLGVDLENGEAERMLEDARIRLPDLARWLEENGRELLERT