Scaffold Ga0184619_10008902

Overview

Basic Information

• Taxon OID: 3300018061
• Scaffold ID: Ga0184619_10008902
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3890
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F063497	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184619_100089021	F063497	N/A	IVLSGIVQIVNVGMTIFTDTSERRRRETRLVAEAIAPPMPT
Ga0184619_100089024	F000805	AGGAGG	MGIPSGDYDSPTKVQQYYHYLQGHQETMQAPAAWHVRWLDLAWLWGFLIVLAFVTLLWVWQYRSTRQKAGLYPVDEFGGYTSELAGPASFFFLILSLILTGFAVVLIVGHLVWGQKF
Ga0184619_100089025	F001079	AGAAG	MAVAVTDTPSALPYVSWSSLTVAVIPMSDWPLVFGSMQALKGHVQEYPGCQKLEAFVHTDAEGGIRIHCYTTWDTPEQLEAFLERGYTFERMLVDVGGITAEPTLVMEKIF
Ga0184619_100089026	F000280	GGAG	MAEREPERRPSAARPLVGYRDVGEDVRHSRGSEYRAWIILAAIMLLYLGWTLIVYFLEPGLR